포도상구균으로부터 DNA topoisomerase I 유전자의 클로닝 및 특성에 관한 연구
- Author(s)
- 김현익
- Issued Date
- 2006
- Abstract
- Type I topoisomerase plays critical roles in DNA metabolism and cell survival. In this study, type I topoisomerase gene from Staphylococcus aureus sp. strain C-66 cells was cloned in pBAD /His A expression vector and expressed in E. coli Top 10 cells. The coding region of this gene was 2,070 nucleotides capable of encoding a polypeptide of 690 amino acids with a predicted molecular mass of 79.1 kDa. The recombinant plasmid named pTP I expressed active type I topoisomerase upon induction with 0.02% L-arabinose. The topoisomerase expressed from pTP I plasmid in E. coli was purified through an affinity chromatography on Hitrap chelating column. The topoisomerase activity of the purified enzyme was Mg2+-dependent and ATP-independent when supercoiled DNA was used as a substrate. The enzyme could relax only negatively supercoiled DNA, not positively supercoiled DNA. The optimal temperature and pH for the enzyme activity were 37℃ and 7.5, respectively. The activity of enzyme was significantly activated in the presence of 50 mM NaCl. The enzyme activity could be clearly inhibited by treatment with camptothecin, but not by nalidixic acid, etoposide, and spermidine. The enzyme made a single-stranded nick on negatively supercoiled DNA and the 5' end of the nick could covalently linked with the enzyme. All these results suggest that the purified enzyme is a typical type I DNA topoisomerase.
- Alternative Title
- Molecular cloning and characterization of a type I DNA topoisomerase gene from Staphylococcus aureus
- Alternative Author(s)
- Kim, Hyun Ik
- Affiliation
- 조선대학교 대학원
- Department
- 일반대학원 생물신소재학과
- Advisor
- 李正燮
- Awarded Date
- 2006-08
- Table Of Contents
- LIST OF FIGURES = ⅳ
LIST OF TABLES = ⅴ
ABSTRACT = ⅵ
Ⅰ. INTRODUCTION = 1
Ⅱ. MATERIALS AND METHODS = 6
Ⅱ-1. Bacterial strains, plasmids and materials = 6
Ⅱ-2. Cultivation of Staphylococcus aureus and E.coli cells = 8
Ⅱ-3. Molecular cloning of a gene encoding topoisomerase I from Staphylococcus aureus sp. strain C-66 = 8
Ⅱ-4. Protein expression of recombinant clone = 9
Ⅱ-5. Purification of the recombinant topoisomerase I = 9
Ⅱ-6. Assay of the relaxation activity on the purified enzyme = 10
Ⅱ-7. SDS - PAGE (SDS-polyacrylamide gel electrophoresis) = 11
Ⅱ-8. Determination of protein concentration = 11
Ⅱ-9. Measurement of topoisomerase I activity depending on time = 12
Ⅱ-10. Measurement of topoisomerase I activity depending on pH = 12
Ⅱ-11. Measurement of topoisomerase I activity depending on temperature = 13
Ⅱ-12. Measurement of topoisomerase I activity depending on various inhibitors = 14
Ⅱ-13. Measurement of topoisomerase I activity depending on divalent cations = 14
Ⅱ-14. Measurenent of topoisomerase I activity depending on EDTA, NaCl and ATP = 15
Ⅱ-15. Purification and radiolabelling of oligonucleotides = 16
Ⅱ-16. Electrophoretic mobility shift assay (EMSA) = 16
Ⅲ. RESULTS AND DISCUSSION = 17
Ⅲ-1. PCR cloning of topoisomerase I gene from S. aureus = 17
Ⅲ-2. Purifiction of topoisomerase I from E. coli cells harboring pTP I = 22
Ⅲ-3. Effect of time, pH and temperature on the purified topoisomerase I activity = 27
Ⅲ-4. Effect of topoisomerase I activity depending on divalent cations = 30
Ⅲ-5. Effect of topoisomerase I activity depending on EDTA, NaCl, and ATP = 32
Ⅲ-6. Effect of topoisomerase I activity depending on various inhibitors = 35
Ⅲ-7. Analysis of the reaction intermediate = 37
Ⅲ-8. Comparison of the relaxation activity with S. aureus topoisomerase I and Methylophaga topoisomerase I = 39
Ⅳ. 적요 = 41
Ⅴ. Reference = 43
- Degree
- Master
- Publisher
- 조선대학교 대학원
- Citation
- 김현익. (2006). 포도상구균으로부터 DNA topoisomerase I 유전자의 클로닝 및 특성에 관한 연구.
- Type
- Dissertation
- URI
- https://oak.chosun.ac.kr/handle/2020.oak/6433
http://chosun.dcollection.net/common/orgView/200000233274
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