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The Regulatory Mechanism of DNA Damage Checkpoint Protein MDC1

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Author(s)
람학리쉬난 가마라간난
Issued Date
2016
Keyword
Cellular and Molecular medicine
Abstract
Mediator of DNA damage checkpoint protein 1(MDC1) plays a vital in DNA damage response (DDR) to repair DNA damages, especially DNA double strand breaks (DSBs). In response to DSBs, MDC1 relocates to the damaged site to mediate recruitment of DNA repair proteins. Any delay or impairment in DSB induced translocation of MDC1 to the nucleus leads to disorganized DNA repair results in accumulation of DNA damages, carcinogenesis, chromatin instability and ultimately cell death. Here, we found Karyopherin α-2 (KPNA2, a member of importin-α family responsible for nuclear transport of proteins bearing Nuclear Localization Sequence) as MDC1 interacting protein in yeast two-hybrid screening and further confirmed by immunoprecipitation assay. In absence of KPNA2, DSB induced nuclear transport and nuclear foci formation of MDC1 was reduced which affected the recruitment of downstream repair proteins RAD51, 53BP1 and BRCA1. We also showed that KPNA2 depleted cells accumulate DSBs which is exposed by detecting increased number of late γH2AX foci after DSB and hyper tail movement in neutral comet assay. Furthermore, DR-GFP reporter assay revealed a lesser amount of Homologous Recombination (HR) activity in KPNA2i condition. Cells showed hypersensitivity to IR-induced cell death in absence of KPNA2, as disclosed by clonogenic cell survival assay. These results suggest that KPNA2 is important for DSB induced nuclear translocation and proper functioning of MDC1 in DDR pathway, especially in HR. We also did an initial screening to elucidate the novel functions of ZNF114, PHB2 and FHL2 in DNA damage repair.|MDC1은 DNA double strand breaks 같은 DNA 손상 자극시 손상복구에 관여하는 중요한 단백질로 알려져 있다. 그러나 MDC1 기능을 조절하는 조절단백질과 그 자세한 기전에 대한 연구는 미흡한 실정이다. 따라서 본 연구논문에서는 MDC1의 활성을 조절하는 새로운 조절단백질을 밝히고자, MDC1의 yeast two hybrid assay를 실시하여 MDC1와 결합하는 몇몇 단백질 (KPNA2, ZNF114, PHB2, FHL2)들을 동정하였고, 그들 후보 조절유전자들의 결핍을 통해 MDC1활성에 미치는 영향을 조사하였다. 각 후보 결합유전자들이 결핍된 세포에서 MDC1의 DNA손상 foci, 상동재결합 활성이 감소함을 확인하였다. 또한 clonal survival assay를 통해 후보유전자들이 결핍된 세포는 방사선조사에 더 민감함을 확인하였다. 따라서 본 연구결과는 MDC1에 결합해 MDC1 활성을 조절하는 새로운 단백질들을 동정하였고, MDC1 활성조절의 새로운 분자적 기전을 제시한다.
Alternative Title
유전자손상체크단백질 MDC1의 조절기전 연구
Alternative Author(s)
Radhakrishnan Kamalakannan
Department
일반대학원 생물신소재학과
Advisor
이정희
Awarded Date
2016-08
Table Of Contents
ABSTRACT (IN KOREAN)……………………viii

I. INTRODUCTION……………………………01

II. Materials and Methods......................................07
A. Cell culture and treatment…………………………...…………07
B. Generation of stable KPNA2 knockdown clones………………07
C. RNA interference...…………………........................................08
D. Plasmid constructs …………………………..…...………….……09
E. Antibodies…….……………….…………………………….……10
F. Yeast two-hybrid analysis………….…………..…………………10
G. Preparation of subcellular fractions..………………………..……11
H. Immunoprecipitation assay and western-blot analysis…………12
I. Immunostaining ………………….………………………...……..13
J. Clonal survival assay…………………………………..……..…...14
K. Neutral comet assay………………………………………………14
L. Analysis of Homologous Recombination activity………….…….15
M. Statistical analysis……………………………………….…….16

III. RESULTS..........................................................17
CHAPTER 1 – KPNA2
A. Identification of MDC-interacting protein……….........................17
B. Endogenous binding of MDC1 and KPNA2..................................18
C. Exogenous binding of full length MDC1 and KPNA2...................19
D. KPNA2 knockdown results in impaired nuclear translocation and IR induced nuclear focus formation of MDC1...............................22
E. KPNA2 mediated MDC1 translocation is necessary for nuclear focus formation of MDC1 downstream repair proteins after DSB.................................................................................................24
F. KPNA2 knockdown leads to increased IR sensitivity and impaired DNA DSB repair............................................................................25
G. KPNA2 knock down leads to impaired homologous recombination repair................................................................……….……..……38
CHAPTER 2 – ZNF114
A. ZNF114 abolishment leads to increased IR sensitivity of cells due to inefficient DNA DSB repair.......................................................43
B. ZNF114 plays a role in DNA DSB repair through Homologous Recombination (HR).......................................................................48
C. Effect of ZNF114 knockdown over DDR proteins.........................52
D. ZNF114 knockdown leads to decreased nuclear foci formation of MDC1 downstream proteins..........................................................55
CHAPTER 3 – PHB2
A. Effect of PHB2 knockdown over MDC1 and its downstream proteins to form irradiation induced nuclear foci............................60
B. Down-regulation of RAD51 and RPA nuclear foci formation in PHB2 deficient cells........................................................................64
C. PHB2 plays a role in Homologous Recombination........................64
CHAPTER 4 – FHL2
A. FHL2 is not involved in irradiation induced DNA DSB repair......70
B. FHL2 and DNA replication stress...................................................75
C. FHL2 knockdown leads to increased HU sensitivity of cells due to inefficient replication stress induced DNA damage repair............75
D. FHL2 plays a role in replication stress induced DNA damage repair through Homologous Recombination (HR)...................................76
E. Effect of FHL2 knockdown over the foci formation ability of DNA damage repair proteins in replication stress induced cells............83

IV. DISCUSSION...................................................87
CHAPTER 1 – KPNA2
A. KPNA2 mediated nuclear translocation of MDC1 in response to γ-irradiation induced DNA DSB......................................................87
B. KPNA2 plays a role in DNA damage repair through recruiting MDC1 to the site of action............................................................89
C. Role of KPNA2 in DDR via HR pathway....................................90
D. Knockdown of KPNA2 affects cell survival rate and delays repair activity…………………………………………….………….….91
CHAPTER 2 to 4 – ZNF114, PHB2 & FHL2......93
REFERENCES.......................................................96
ABSTRACT (IN ENGLISH)................................108
ACKNOWLEDGEMENT....................................110
Degree
Doctor
Publisher
Chosun University, Cellular and Molecular Medicine, Dept. of Bio-Materials
Citation
람학리쉬난 가마라간난. (2016). The Regulatory Mechanism of DNA Damage Checkpoint Protein MDC1.
Type
Dissertation
URI
https://oak.chosun.ac.kr/handle/2020.oak/12863
http://chosun.dcollection.net/common/orgView/200000265623
Appears in Collections:
General Graduate School > 4. Theses(Ph.D)
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