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The Evaluation of Physicochemical and Biological Activities and High-Functional Antibacterial peptide produced by Bacillus strain isolated from Korean Traditional Fermented Food

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Author(s)
김용균
Issued Date
2023
Keyword
Bacillus siamensis, YK14, Antimicrobial Peptides, Multidrug-resistant bacteria, 16S rRNA, Action mechanism
Abstract
Antimicrobial peptides (AMP) are potent, broad-spectrum antibiotics that possess strong antimicrobial activity against multidrug-resistant bacteria. The purpose of this study was to assess the identification, production, and characterization of an antimicrobial peptide derived from kimchi, a traditional Korean dish of fermented vegetables. A 16S rRNA gene sequencing analysis revealed that kimchi derived bacterial strain was 99.9% identical to the Gen Bank reference strain of Bacillus siamensis. The production of the Bacillus strain YK14 was carried out in optimized media (1 % glucose and 1 % peptone) for 36 hours. YK14 was found to be stable over a broad range of pH (6-9) and thermo-tolerant up to 50 ºC. The molecular weight of YK14 was approximate ~5kda determined by SDS-PAGE. Peptide YK14 showed a stronger antimicrobial activity against different pathogenic microorganisms such as Escherichia coli KCTC 1925, Methicillin-resistant Staphylococcus aureus 4-5, Enterococcus faecalis ATCC 29212, Vancomycin-resistant Enterococci 4. Moreover, the anti-biofilm assay demonstrated that peptide YK14 combined with conventional antibiotics inhibited biofilm formation and the peptide YK14 has significant antioxidant properties that were comparable to that of standard ascorbic acid. |항균 펩타이드(AMP)는 약제내성을 지닌 박테리아에 대한 강력한 항균 활성을 갖는 강력한 광범위한 항생제이다. 본 연구는 한국의 전통 발효 식품인 김치에서 유래한 항균 펩타이드의 identification, production 및 기타 생화학적 특성을 분석하는 것을 목적으로 하였다. 김치에서 분리한 고기능성 펩타이드를 생산하는 균주의 16S rRNA 유전자 염기서열 분석 결과 Gen Bank 기준 균주인 Bacillus siamensis와 99.9% 유사한 균주임을 확인 할 수 있었다. Bacillus 균주중 하나인 YK14는 최적배지 탐색을 통해 결정된 포도당 1%, 펩톤 1%의 배지조성에서 36시간 동안 배양하였으며, YK14가 생산하는 펩타이드는 비교적 광범위한 pH(6-9)에서 안정적으로 활성을 유지하였으며 섭씨 50 ºC도 까지 내열성을 바탕으로 생물학적 활성을 확인 할 수 있었다. 펩타이드 YK14의 분자량은 SDS-PAGE를 통해 약 5kda임을 확인하였으며, Escherichia coli KCTC 1925, Methicillin-resistant Staphylococcus aureus 4-5, Enterococcus faecalis ATCC 29212, Vancomycin-resistant Enterococci 4와 같은 다른 병원성 미생물에 대해 매우 강력한 항균 활성을 보였다. 또한 Anti-biofilm assay결과 기존 항생제와 혼합된 펩타이드 YK14는 바이오필름 형성을 효과적으로 억제하였으며 펩타이드 YK14는 표준 Ascorbic acid에 버금가는 현저한 항산화 특성을 가지고 있는 것으로 나타났다.
Alternative Title
한국 전통 발효식품에서 분리한 Bacillus 균주가 생산하는 고기능성 항균 펩타이드의 이화학적, 생물학적 활성 평가
Alternative Author(s)
Young Kyun Kim
Affiliation
조선대학교 일반대학원
Department
일반대학원 약학과
Advisor
유진철
Awarded Date
2023-02
Table Of Contents
Abbreviations ⅴ
List of Tables ⅶ
List of Figures ⅷ
Abstract ⅸ
Abstract (Korean) ⅺ

CHAPTER ONE : INTRODUCTION 1
1.1 The development of antibiotic resistance and the discovery of antibiotics 2
1.2 Alternatives to conventional antibiotics 4
1.3 Antimicrobial peptides 5
1.4 Antioxidant peptides 6
1.5 Structure of Antimicrobial peptides 7
1.6 Microbial Production of peptides 8
1.7 Fermentation food of Korea 9
1.8 Kimchi fermentation and its Microorganisms 10
PURPOSE AND SUMMARY OF THIS THESIS 11

CHAPTER TWO : Identification and characterization of peptide YK14 12
2.1. Introduction 13
2.2. Materials and methods 15
2.2.1. Materials 15
2.2.2. Bacterial isolates and identification 16
2.2.3. Media optimization and bacterial culture condition 17
2.2.4. Purification of peptide YK14 19
2.2.5. Stability of peptide YK14 20
2.2.6. SDS gel electrophoresis 21
2.2.7. Minimum Inhibitory Concentration (MIC) Test 22
2.2.8. Time-kill interaction between an antibiotic and YK14 23
2.2.9. Anti-biofilm properties of peptide YK14 24
2.3. Antioxidant activity of YK14 25
2.3.1 Scavenging of DPPH Radical assay 25
2.3.2 Scavenging of ABTS•+ Radical assay 26
2.3.3 FRAP (Ferric Reducing Antioxidant Power) Activity Assay 27
2.3.4 CUPRAC (Cupric Reducing Antioxidant Capacity) Activity Assay 28
2.4. RESULTS AND DISCUSSION 29
2.4.1 Bacterial isolates and identification 29
2.4.2. Media optimization and bacterial culture condition 31
2.4.3. Purification and Molecular weight determination of YK14 33
2.4.4 Stability of peptide YK14 37
2.4.5. Minimum Inhibitory Concentration Test 39
2.4.6. The time-kill kinetics report of peptide 41
2.4.7. Anti-biofilm activity of peptide YK14 43
2.4.8. Antioxidant study 45
2.5. Conclusion 48
REFERENCES 49
ACKNOWLEDGEMENT 54
Degree
Doctor
Publisher
조선대학교 대학원
Citation
김용균. (2023). The Evaluation of Physicochemical and Biological Activities and High-Functional Antibacterial peptide produced by Bacillus strain isolated from Korean Traditional Fermented Food.
Type
Dissertation
URI
https://oak.chosun.ac.kr/handle/2020.oak/17550
http://chosun.dcollection.net/common/orgView/200000668971
Appears in Collections:
General Graduate School > 4. Theses(Ph.D)
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